After which reference the namespace inside the notes SGC707 web content material making use of a
And then reference the namespace in the notes content material using a prefix. The following example illustrates this method:Author Manuscript Author Manuscript Author Manuscript Author ManuscriptAnother method is to declare the XHTML namespace within the notes content material itself, as inside the following example:The xmlns”http:w3.org999xhtml” declaration on physique as shown above alterations the default XML namespace within it, such that all of its content material is by default in theJ Integr Bioinform. Author manuscript; accessible in PMC 207 June 02.Hucka et al.PageXHTML namespace. This can be a particularly hassle-free approach simply because it obviates the require to prefix each and every element with a namespace prefix (i.e xhtml: within the prior case). Other approaches are also attainable. The content material of notes: SBML doesn’t call for the content of notes to be any certain XHTML element; the content material is often nearly any wellformed XHTML content. You will discover only two uncomplicated restrictions. The very first restriction comes from the needs of XML: the notes element must not include an XML declaration nor a DOCTYPE declaration. Which is, notes should not containAuthor Manuscript Author Manuscript Author Manuscript Author PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/25504322 Manuscriptnor (where the following is only 1 particular example of a DOCTYPE declaration)The second restriction is intended to balance freedom of content using the complexity of implementing computer software that may interpret the content. The content material of notes in SBML can consist only from the following possibilities: . A total XHTML document (minus the XML and DOCTYPE declarations, obviously), that is definitely, XHTML content starting together with the html tag. The following is an example skeleton:two.The body element from an XHTML document. The following is an instance skeleton:three.Any XHTML content that could be permitted within a body element. If this consists of many components, each a single will have to declare the XML namespace separately. The following is definitely an example fragment:J Integr Bioinform. Author manuscript; obtainable in PMC 207 June 02.Hucka et al.PageAnother strategy to summarize the restrictions above is merely to say that the content of an SBML notes element may be only be a full html element, a physique element, or what ever is permitted inside a physique element. In practice, this will not limit in any meaningful way what is usually placed inside a notes element; one example is, if an application or modeler wants to put a total XHTML web page, like a head element, it can be completed by putting in anything starting with all the html container. On the other hand, the restrictions above do make it somewhat simpler to write software which will study and create the notes content material. Appendix F describes a single achievable approach to performing just that. 3.two.4 The annotation elementWhereas the notes element described above can be a container for content material to become shown straight to humans, the annotation element is a container for optional softwaregenerated content material not meant to be shown to humans. Just about every object derived from SBase can have its personal worth for annotation. The element’s content material variety is XML sort any, enabling essentially arbitrary wellformed XML information content material. SBML locations only a couple of restrictions around the organization of the content; they are intended to help computer software tools read and write the information too as enable lessen conflicts involving annotations added by distinctive tools. The use of XML namespaces in annotation: In the outset, software developers ought to keep in mind that several computer software tools may well attempt to read and write annotation content material. To.
